Microarray
references:
Selected
Reviews
- Hughes
TR, Shoemaker DD. DNA microarrays for expression profiling.
Curr Opin Chem Biol. 2001 Feb;5(1):21-5. Review. PMID: 11166643
[PubMed - indexed for MEDLINE]
- Harkin
DP. Uncovering functionally relevant signaling pathways using
microarray-based expression profiling. Oncologist.
2000;5(6):501-7. Review. PMID: 11110602 [PubMed - indexed for
MEDLINE]
- Claverie
JM. Computational methods for the identification of
differential and coordinated gene expression. Hum Mol Genet.
1999;8(10):1821-32. Review. PMID: 10469833 [PubMed - indexed for
MEDLINE]
- Hoos
A, Cordon-Cardo C. Tissue microarray profiling of cancer
specimens and cell lines: opportunities and limitations. Lab
Invest. 2001 Oct;81(10):1331-8. PMID: 11598146 [PubMed - in
process]
- Greenberg
SA. DNA microarray gene expression analysis technology and
its application to neurological disorders. Neurology. 2001 Sep
11;57(5):755-61. PMID: 11575306 [PubMed - in process]
- Wu
TD. Analysing gene expression data from DNA microarrays to
identify candidate genes. J Pathol. 2001 Sep;195(1):53-65. PMID:
11568891 [PubMed - in process]
- Schulze
A, Downward J. Navigating gene expression using
microarrays--a technology review. Nat Cell Biol. 2001
Aug;3(8):E190-5. Review. PMID: 11483980 [PubMed - indexed for
MEDLINE]
- Planet
PJ, DeSalle R, Siddall M, Bael T, Sarkar IN, Stanley SE.
Systematic analysis of DNA microarray data: ordering and
interpreting patterns of gene expression. Genome Res. 2001
Jul;11(7):1149-55. Review. No abstract available. PMID: 11435396
[PubMed - indexed for MEDLINE]
- Devaux
F, Marc P, Jacq C. Transcriptomes, transcription activators
and microarrays. FEBS Lett. 2001 Jun 8;498(2-3):140-4. Review.
PMID: 11412845 [PubMed - indexed for MEDLINE]
- Altman
RB, Raychaudhuri S. Whole-genome expression analysis:
challenges beyond clustering. Curr Opin Struct Biol. 2001
Jun;11(3):340-7. Review. PMID: 11406385 [PubMed - indexed for
MEDLINE]
- Quackenbush
J. Computational analysis of microarray data. Nat Rev Genet.
2001 Jun;2(6):418-27. Review. PMID: 11389458 [PubMed - indexed
for MEDLINE]
- Blohm
DH, Guiseppi-Elie A. New developments in microarray
technology. Curr Opin Biotechnol. 2001 Feb;12(1):41-7. Review.
PMID: 11167071 [PubMed - indexed for MEDLINE]
- Hegde
P, Qi R, Abernathy K, Gay C, Dharap S, Gaspard R, Hughes JE,
Snesrud E, Lee N, Quackenbush J. A concise guide to cDNA
microarray analysis. Biotechniques. 2000 Sep;29(3):548-50, 552-4,
556 passim. Review. PMID: 10997270 [PubMed - indexed for MEDLINE]
- Nature
Genetics Chipping Forecast, v21 supp 1999
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Data
Analysis Reviews
- Hess
KR, Zhang W, Baggerly KA, Stivers DN, Coombes KR, Zhang W.
Microarrays:
handling the deluge of data and extracting reliable information.
Trends Biotechnol. 2001 Nov;19(11):463-8. PMID: 11602311 [PubMed
- in process]
- Miles
MF. Microarrays: lost in a storm of data? Nat Rev Neurosci.
2001 Jun;2(6):441-3. Review. PMID: 11389479 [PubMed - indexed for
MEDLINE]
- Becker
KG. The sharing of cDNA microarray data. Nat Rev Neurosci.
2001 Jun;2(6):438-40. Review. PMID: 11389478 [PubMed - indexed
for MEDLINE]
- Geschwind
DH. Sharing gene expression data: an array of options. Nat
Rev Neurosci. 2001 Jun;2(6):435-8. Review. PMID: 11389477 [PubMed
- indexed for MEDLINE]
- Quackenbush
J. Computational analysis of microarray data. Nat Rev Genet.
2001 Jun;2(6):418-27. Review. PMID: 11389458 [PubMed - indexed
for MEDLINE]
- Kerr
MK, Churchill GA. Statistical design and the analysis of gene
expression microarray data. Genet Res. 2001 Apr;77(2):123-8.
Review. PMID: 11355567 [PubMed - indexed for MEDLINE]
- Raychaudhuri
S, Sutphin PD, Chang JT, Altman RB. Basic microarray
analysis: grouping and feature reduction. Trends Biotechnol. 2001
May;19(5):189-93. Review. PMID: 11301132 [PubMed - indexed for
MEDLINE]
Sensitivity
- Yue
H, Eastman PS, Wang BB, Minor J, Doctolero MH, Nuttall RL, Stack
R, Becker JW, Montgomery JR, Vainer M, Johnston R.
An
evaluation of the performance of cDNA microarrays for detecting
changes in global mRNA expression. Nucleic Acids Res. 2001 Apr
15;29(8):E41-1. PMID: 11292855 [PubMed - indexed for MEDLINE]
- Pavlidis
P, Noble WS. Analysis of strain and regional variation in
gene expression in mouse brain. Genome Biol.
2001;2(10):RESEARCH0042. PMID: 11597334 [PubMed - in process]
- Taniguchi
M, Miura K, Iwao H, Yamanaka S. Quantitative assessment of
DNA microarrays--comparison with Northern blot analyses.
Genomics. 2001 Jan 1;71(1):34-9. PMID: 11161795 [PubMed - indexed
for MEDLINE]
- Kane
MD, Jatkoe TA, Stumpf CR, Lu J, Thomas JD, Madore SJ.
Assessment of the sensitivity and specificity of oligonucleotide
(50mer) microarrays. Nucleic Acids Res. 2000 Nov
15;28(22):4552-7. PMID: 11071945 [PubMed - indexed for MEDLINE]
- Stears
RL, Getts RC, Gullans SR. A novel, sensitive detection system
for high-density microarrays using dendrimer technology. Physiol
Genomics. 2000 Aug 9;3(2):93-9. PMID: 11015604 [PubMed - indexed
for MEDLINE]
- Zammatteo
N, Jeanmart L, Hamels S, Courtois S, Louette P, Hevesi L, Remacle
J. Comparison between different strategies of covalent
attachment of DNA to glass surfaces to build DNA microarrays.
Anal Biochem. 2000 Apr 10;280(1):143-50. PMID: 10805532 [PubMed -
indexed for MEDLINE]
- Bartosiewicz
M, Trounstine M, Barker D, Johnston R, Buckpitt A.
Development of a toxicological gene array and quantitative
assessment of this technology. Arch Biochem Biophys. 2000 Apr
1;376(1):66-73. PMID: 10729191 [PubMed - indexed for MEDLINE]
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Amplification
- Dent
GW, O'Dell DM, Eberwine JH. Gene
expression profiling in the amygdala: An approach to examine the
molecular substrates of mammalian behavior. Physiol Behav. 2001
Aug;73(5):841-7. PMID: 11566217 [PubMed - in process]
- Wang
E, Miller LD, Ohnmacht GA, Liu ET, Marincola FM.
High-fidelity mRNA amplification for gene profiling. Nat
Biotechnol. 2000 Apr;18(4):457-9. PMID: 10748532 [PubMed -
indexed for MEDLINE]
- Kacharmina
JE, Crino PB, Eberwine J. Preparation of cDNA from single
cells and subcellular regions. Methods Enzymol. 1999;303:3-18.
PMID: 10349635 [PubMed - indexed for MEDLINE]
- Cheetham
JE, Coleman PD, Chow N. Isolation of single
immunohistochemically identified whole neuronal cell bodies from
post-mortem human brain for simultaneous analysis of multiple
gene expression. J Neurosci Methods. 1997 Nov 7;77(1):43-8. PMID:
9402555 [PubMed - indexed for MEDLINE]
- Craig
JC, Eberwine JH, Calvin JA, Wlodarczyk B, Bennett GD, Finnell RH.
Developmental expression of morphoregulatory genes in the mouse
embryo: an analytical approach using a novel technology. Biochem
Mol Med. 1997 Apr;60(2):81-91. PMID: 9169087 [PubMed - indexed
for MEDLINE]
- Phillips
J, Eberwine JH. Antisense RNA Amplification: A Linear
Amplification Method for Analyzing the mRNA Population from
Single Living Cells Methods. 1996 Dec;10(3):283-8. PMID: 8954839
[PubMed - as supplied by publisher]
Laser
capture microdissection and transcript profiling
- Alevizos
I, Mahadevappa M, Zhang X, Ohyama H, Kohno Y, Posner M, Gallagher
GT, Varvares M, Cohen D, Kim D, Kent R, Donoff RB, Todd R, Yung
CM, Warrington JA, Wong DT. Oral
cancer in vivo gene expression profiling assisted by laser
capture microdissection and microarray analysis. Oncogene. 2001
Sep 27;20(43):6196-204. PMID: 11593428 [PubMed - in process]
- Mariani
L, Beaudry C, McDonough WS, Hoelzinger DB, Kaczmarek E, Ponce F,
Coons SW, Giese A, Seiler RW, Berens ME. Death-associated
protein 3 (dap-3) is overexpressed in invasive glioblastoma cells
in vivo and in glioma cell lines with induced motility phenotype
in vitro. Clin Cancer Res. 2001 Aug;7(8):2480-9. PMID: 11489830
[PubMed - in process]
- Bahn
S, Augood SJ, Ryan M, Standaert DG, Starkey M, Emson PC. Gene
expression profiling in the post-mortem human brain - no cause
for dismay. J Chem Neuroanat. 2001 Jul;22(1-2):79-94. PMID:
11470556 [PubMed - in process]
- Nagle
RB. New molecular approaches to tissue analysis. J Histochem
Cytochem. 2001 Aug;49(8):1063-4. PMID: 11457937 [PubMed - indexed
for MEDLINE]
- Kitahara
O, Furukawa Y, Tanaka T, Kihara C, Ono K, Yanagawa R, Nita ME,
Takagi T, Nakamura Y, Tsunoda T. Alterations of gene
expression during colorectal carcinogenesis revealed by cDNA
microarrays after laser-capture microdissection of tumor tissues
and normal epithelia. Cancer Res. 2001 May 1;61(9):3544-9. PMID:
11325815 [PubMed - indexed for MEDLINE]
- Ohyama
H, Zhang X, Kohno Y, Alevizos I, Posner M, Wong DT, Todd R.
Laser capture microdissection-generated target sample for
high-density oligonucleotide array hybridization. Biotechniques.
2000 Sep;29(3):530-6. PMID: 10997267 [PubMed - indexed for
MEDLINE]
- Sgroi
DC, Teng S, Robinson G, LeVangie R, Hudson JR Jr, Elkahloun AG.
In vivo gene expression profile analysis of human breast cancer
progression. Cancer Res. 1999 Nov 15;59(22):5656-61. PMID:
10582678 [PubMed - indexed for MEDLINE]
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Last
Updated on 9/3/03
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